[POLL]Linux Software

Use this forum for general bioinformatics questions, or questions regarding genomics, proteomics, etc.

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[POLL]Linux Software

Postby ete » Jun 28 2012 9:39 am

Hello everybody!

I programming some Biotools (Blasting, Ligation, Alignments, RNAi off-target, PCR etc.) in my free-time, mostly for Windows.

I have a question whether there is any interest for Linux users (esp. Ubuntu) to use such tools. The Ubuntu software center has a lack of scientific tools but before I start to port my programs, I would like to know whether there is an interest from the user site.

So how many of you have access/use Ubuntu for work?

Thanks for any comment!
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Re: [POLL]Linux Software

Postby r.rosati » Jun 29 2012 2:03 pm

I use Linux at work, but it's Debian (the testing release, Wheezy). The Kernel is 3.2.0-2-amd64, with GNOME 3.4.2.
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Re: [POLL]Linux Software

Postby danudwary » Aug 16 2012 10:10 am

Stefanie,
While I certainly wouldn't discourage anybody from building more bioinformatics tools, you should check out BioLinux. It's a full-on Ubuntu with many, many bioinformatics tools pre-configured.
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Re: [POLL]Linux Software

Postby Bluewoodtree » Feb 08 2013 10:27 pm

We are using Ubuntu in my current lab. Previously I was in a lab with openSUSE and Red Hat.

I think you are really wrong: "The Ubuntu software center has a lack of scientific tools". Most scientific tools (from phylogenetics to protein modeling) are JUST available for Linux/Unix. CHARMM, Amber, DrugScore, Modeller... this is an infinite list ;)
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