Question: Running PSI-BLAST Against Multiple Queries

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Question: Running PSI-BLAST Against Multiple Queries

Postby Morgis89 » Nov 12 2015 6:24 pm

Hi, I'm new in standalone blast+ and in linux terminal. I set the bash-profile to load the PATH and BLASTDB for my blast already, but I don't know how to use psi-blast yet. The question is - Can I and How (If yes) do the search against db with one query sequnce? But the file have >400 FASTA sequences. I need to checkout every sequence alone agaisnt database. Is it possible to run this job automatic in blast+? (one run in loop for every seq?)

Pls help !
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