Pool RNA samples

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Pool RNA samples

Postby ifhmn » Aug 16 2012 9:27 am

I got low concentration of RNA samples in mature plant compared to the immatured using Qiagen RNA extraction kit. The concentrations are around 50-80ng/uL and using these concentrations, I cannot synthesis 1 ug of cDNA. I've been tried to pool identical samples by ethanol and isopropanol precipitation few times and resulted in degradation of RNA when I checked on gel.
Is there are any way to improve the concentration of my RNA?
Should I pooled them before of after the DNase treatment?
Usually, how much RNA can be used to synthesis cDNA for qPCR? Is it still ok if I used 0.5ug or lower for my qPCR?
-many thanks-
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Re: Pool RNA samples

Postby relaxin » Aug 16 2012 11:16 am

If you use RNeasy mini kit, you can follow its RNA cleanup protocol to concentrate the pooled RNA on one spin column, treat with DNase, and elute the pooled RNA in 50 ul.

My qPCR protocol uses 2 ug total RNA for cDNA synthesis, but only 2 ul of 1:10 dilution of the cDNA per tube are used for qPCR. So 0.5 ug total RNA may be sufficient for cDNA synthesis. You may dilute cDNA 1:2 instead of 1:10.
Not affiliated with any company. Mention of a specifc product does not imply my endorsement of the product. No conflict of interest or guarantee to work on the advice given. Do as I say, not as I do. Not liable to the loss of your valuable samples.
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